List of protein secondary structure prediction programs

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List of notable protein secondary structure prediction programs

Name  | Method description | Type | Link | Initial release

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RaptorX-SS8  | predict both 3-state and 8-state secondary structure using conditional neural fields from PSI-BLAST profiles | Webserver/downloadable | server download | 2011
GOR | Information theory/Bayesian inference | Many implementations | Basic GOR GOR V | 2002 (GOR V)
Jpred | Multiple Neural network assignment from PSI-BLAST and HMMER profiles. Predicts secondary structure and solvent accessibility | Webserver | server and API | 1998
PredictProtein | Profile-based neural network | Webserver | server | 1992
PSIPRED | two feed-forward neural networks which perform an analysis on output obtained from PSI-BLAST | Webserver | server | 1999

## See also

* List of protein structure prediction software
* Protein structure prediction

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