Photosynthesis

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This editable Main Article is under development and subject to a disclaimer.

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In the light-initiated and light-driven physico-chemical process of photosynthesis -- an activity performed only by certain types of organisms -- an organism synthesizes its own constituent, energy-rich organic compounds from inorganic starting materials using sunlight as the ultimate source of energy, energy that enables the organism to perform the work required to implement the organosynthesis, as well to implement all of its cellular activities, including those that generate and maintain the molecular mechanisms of the photosynthetic process itself.[1]

Photosynthetic organisms utilize one of three types of photosynthesis: anoxygenic photosynthesis, oxygenic photosynthesis, and rhodopsin-based photosynthesis.

(PD) Diagram: Citizendium Author Anthony.Sebastian
Figure 1. Oxygenic photosynthesis & cellular respiration. Measurement of net oxygen release to the external environment requires subtracting oxygen utilization by the organism in the process of respiration.

In oxygenic photosynthesis, performed by cyanobacteria, algae, and plants, an abundance of photosynthesis-capable organisms generate not only their own constituent organic compounds but also generate the oxygen required to release the energy from those compounds that enables their work of living -- via the process of cellular respiration -- with enough oxygen leftover to replenish the oxygen in the atmosphere consumed by non-photosynthesis-capable organisms, whose life depends on that oxygen.[2] The life of nearly all non-photosynthesis-capable organisms, including humans, depend absolutely on the existence of photosynthesis-capable organisms.

Photosynthesis-capable organisms contribute to removing carbon dioxide discharged into the atmosphere by non-photosynthesis-capable organisms, carbon dioxide serving as the inorganic carbon source for the light-energy-driven synthesis of organic carbon compounds that ultimately provide organic substrates and biologically useful energy for nearly all of Earth's lifeforms.[3] [4] [5]

The term 'photosynthesis' derives from Greek roots for 'light' and 'putting together' or 'assembling', referring to sunlight energy utilized to assemble organic compounds, light energy transformed into the chemical energy of bonding electrons.

Metaphorically, the photosynthesis-capable organism sustains its living state by harvesting and eating the sun,[6] qualifying it as a so-called autotroph, specifically a photoautotroph,[7] eating a diet solely of inorganic compounds using solar energy -- the 'inorg-an' equivalent of a 'veg-an'. In so doing it serves as a source of energy-rich organic compounds, as food, for Earth's non-photosynthesis-capable organisms, referred to as heterotrophs.

## Overview[edit]

## Contents

* 1 Overview
* 2 The photosynthetic process
* 3 Aims of article
* 4 Chlorophyll-based photosynthesis
* 5 Solar energy
* 6 References Cited and Notes in Text

Living systems require energy to power the metabolic reactions that perform the functions that sustain their existence. Sunlight, an abundant source of energy, cannot directly power those life-sustaining metabolic reactions. Instead it converts its electromagnetic energy to chemical energy, first in the form of the energy carriers adenosine triphosphate (ATP) and reduced nicotinamide adenine dinucleotide phosphate(NADPH), then in the form of the chemical bonds in energy-rich carbohydrate compounds. Those energy-rich molecules can directly power the metabolic reactions that sustain the living state. Photosynthesis is the process that provides for the conversion of electromagnetic energy to chemical energy.

Our current scientific understanding regards the oxygen-generating-carbon-dioxide-consuming-type of photosynthesis as our biosphere's most important bio-physico-chemical process, necessary for maintaining biosphere vitality, modulating the composition of the atmosphere, and providing a food source for non-photosynthesis-capable organisms, among other services it offers the biosphere.[8]

A photosynthesis-capable organism resides in a downhill energy gradient -- a downhill flow of energetic solar photons -- harvesting some of it to perform the work of living, reducing its internal entropy through self-organization, increasing its information content, remaining for a lifetime far from the equilibrium state wherein the organism becomes lifeless. Its natural lifespan may never actualize, as it enters the food chain of the non-photosynthesis-capable organisms abundant in the biosphere.

In sum, a photosynthesis-capable organism captures a portion of the energy of sunlight, converting (transducing) it to, and storing it as, chemical energy (in the form of energy-rich organic compounds), which the organism uses in its cellular processes for growth, maintenance, and reproduction, thereby obviating any need for the organism, a so-called autotroph, or photoautotroph, to feed on other organisms for organic matter to meet its substrate and energy needs.[3] [4] A large number and variety of organisms (e.g., plants, algae and certain bacteria -- so-called phototrophic bacteria) carry out a type of photosynthesis, and in so constructing themselves from inorganic chemicals supply the source of food for the rest of the living world.

An estimated half the genera of organisms alive 65 million years ago purportedly perished due to a temporary shutting down of photosynthesis caused by a global blocking of sunlight reaching Earth's surface due to a dense atmospheric dust produced by an asteroid impacting the planet -- a phenomenon that indicates the fundamental importance of photosynthetic organisms in sustaining the living world.[9] (See also Blankenship (2002), Chapter 1, page 1[4])

## The photosynthetic process[edit]

In the familiar example of green plants, but also in phototropic algae and bacteria, the photosynthetic process utilizes special photon-absorbing pigment molecules, called chlorophylls, to enable the energy of photons radiated from the sun to energize electrons in those molecules, electrons ultimately supplied by the splitting of water molecules in a reaction that also converts water's oxygen atoms to molecular oxygen for release into the atmosphere and for use by the plant. The energized electrons subsequently transfer their energy in chemical reactions to energy-carrier molecules -- generating adenosine triphosphate (ATP) and nicotinamide adenine dinucleotide phosphate (NADPH) [Figure 2], the energy therein used to synthesize organic compounds using the inorganic carbon compound, carbon dioxide, as the carbon source starting material. Besides water and carbon dioxide, the photosynthesizing organism also draws from the environment other inorganic material (e.g., phosphorus, nitrogen, sulfur) needed to synthesize organic compounds.

(PD) Diagram: Anthony.Sebastian
Figure 2. See text in preceding paragraph and caption at right.

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Figure 2 caption: Photosynthesis divides into two components, an energy transduction component, shown on the left-hand side of the figure, and a carbon assimilation component, shown on the right-hand side of the figure. The former comprises the light-dependent reactions, the latter, the light-independent reactions. The carbon assimilation component converts oxidized carbon dioxide (CO2) into energy-rich reduced carbon compounds, such as carbohydrates, that have had electrons donated to them in order to build carbon-carbon bonds and other covalent carbon bonds. The ATP produced in the energy transduction process supplies energy for carbon assimilation, and the NADPH -- the 'reducing' power -- supplies the electrons. Thus, both ATP and NADPH serve as carriers of the energy harvested from the sun, the special role of NADPH as electron donor for the reduction of carbon dioxide to carbohydrate. (Figure adapted from Hopkins (2006)[10]).

The major starting and replenishing materials -- water (H2O) and carbon dioxide (CO2) -- abound in the environment, H2O providing the electrons for the initial photon-driven electron energizing mechanisms, releasing the H2O´s oxygen into the environment, CO2 providing the carbon source for the energy-storing reduction mechanisms (addition of electrons) that generate the organic molecules. The photosynthesizing organisms, and the non-photosynthesizing organisms that feed on them, ultimately use those energy-rich organic molecules as cellular building blocks and energy sources, enabling the cellular structures and functions that maintain the activities of living for nearly every living system on Earth.[1] Living systems on Earth, with notable exceptions, are "solar powered".

Figure 3.

The origin and evolution of photosynthesis rank as major steps in the evolution of living systems, pumping oxygen into the atmosphere, absorbing carbon dioxide from the atmosphere, and for organisms that cannot generate their own food, serving as a source of chemical energy and organic matter. In the absence of photosynthesis, nearly all life on earth as we know it would perish.

Without photosynthesis the luxuriant, awe-inspiring variety of living systems we see in the terrestrial and marine world about us would not exist. Nearly all living systems on Earth depend directly or indirectly on the energy captured by photosynthesis from light energy radiating to our planet from our sun (see below). For us humans, photosynthesis indirectly provides essentially all of our food-energy, as well the bulk of our non-food energy resources, inasmuch as ancient photosynthesizing organisms produced the energy-rich carbon-containing molecules we combust as fossil fuels -- oil, natural gas, coal and wood -- to generate electricity and other forms of energy we use to support human activity.

Nearly every oxygen atom that we inhale from the atmosphere emerged through photosynthetic liberation from a water molecule, among the countless water molecules covering 70% of the Earth´s surface. The chemical energy our bodies generate using that oxygen in biochemically combusting our food represents, almost literally, the energy that photosynthesis secured from the energy in sunlight.[11] Likewise, the energy we generate with that oxygen in combusting fuels -- oil, coal, wood, natural gas -- owes its origin to photosynthetic capture of the energy of sunlight. The sun offers the energy of life, and the living process of photosynthesis accepts the offer and distributes it.

Photosynthesis researcher, Rajni Govindjee, puts it this way:

> Sun is the source of almost all energy that sustains Life on Earth. Each minute the Sun converts 120 million tons of its mass into electromagnetic radiation and dumps it out into space. One billionth of that reaches the Earth. It takes only 8 minutes for this radiation to travel 93 million miles to reach us. The visible portion of this electromagnetic radiation (VIBGYOR, violet, indigo, blue, green, yellow, orange and red, the colors in the rainbow) is captured by plants, algae and cyanobacteria. The green color of the leaves is due to the presence of a pigment called chlorophyll. Chlorophyll absorbs blue and red light efficiently, but not green, the transmitted green light gives the leaves their green color. The process by which plants utilize sunlight (absorbed by chlorophyll) to make food (that we need for our lives) and oxygen (that we need to breathe) from carbon dioxide (CO2) and water is called Photosynthesis. In addition, past photosynthesis provides the fossil fuels needed to power the industry and automobiles etc.[5]

## Aims of article[edit]

This article will classify the differing types of photosynthesizing organisms, and describe the details of the differing photosynthetic mechanisms employed by them. It focuses on those photosynthetic organisms and processes that employ chlorophyll molecules for photon absorption, but will briefly discuss a different form of photosynthesis by certain bacteria using a rhodopsin-type molecule, and consider organisms that derive only a part of their energy from light. It will also discuss the implications of photosynthesis in the sciences of biology, geology, oceanography, climatology, and other areas of importance to the life of planet Earth, since without photosynthesis nearly every species on Earth would perish.[1][4][12][13][14][15][16] [6]

## Chlorophyll-based photosynthesis[edit]

Photosynthesis based on chlorophyll-type pigment molecules is the most common type of photosynthesis, using photon-driven energizing and transferring of electrons. Chlorophyll-based photosynthesis is carried out by plants, algae, cyanobacteria, and certain organisms that differ in virtue of not generating oxygen during the process. A simplified overview of chlorophyll-based oxygen-generating photosynthesis is shown in the accompanying illustration.

(CC) Image: Drawing by Anthony Sebastian
Simpified overview of photosynthesis in plants. The photosynthesizing organism retains a fraction of the oxygen it generates.

|  (CC) Image: Drawing by Anthony Sebastian
Overview of photosynthesis depicting separation of steps in the thylakoids and stroma of the chloroplast. Most accounts of photosynthesis use the terminology 'light-independent' as opposed to 'light-non-dependent' used in this diagram.

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In green plants, the biological process of photosynthesis typically occurs in leaf cells but also in all green parts of the plant (.e.g., the stems). They capture the energy from photons in sunlight, use it to energize electrons split from water and release a largely 'waste' product, oxygen (O2) -- thus defining 'oxygenic' photosynthesis. The captured and transformed energy is then used to drive a set of biochemical reactions that converts carbon dioxide (CO2) and water (H2O) to a carbohydrate compound, a triose, a 3-carbon sugar.[17].

Triose, as triose phosphates, exit the leaf cell's organelles that synthesizes them -- viz., a chloroplast, condense themselves into six-carbon hexose phosphates, ultimately forming dimers like sucrose, or polymers like starch or cellulose, the so-called reduced forms of carbon. Thus, the mass of plants, and their predators in the food chain, is from the enrichment of water's electrons energized by captured photons and the subsequent formation of energy-rich carbon compounds from the carbon dioxide in the air.

Between these two steps, a variety of energy-rich intermediates are formed, some of which can be metabolized by the photosynthetic organism. Light reactions can generate adenosine triphosphate (ATP), a recirculating and recyclable energy currency of cells. The process also produces other recyclable forms of circulating energy currency (e.g., NADPH). Photosynthesizing cells thus convert light energy to the life-sustaining chemical energy that drives life-sustaining cellular processes.

Overview of steps involved in using light energy to produce carbohydrates or hydrogen.

* In the chloroplast's thylakoid membranes, electrons in a pigment-protein complex, called photosystem II (PS-II), excited by PS-II-captured photons, are shuttled to the next step in an electron-chain of proteins, the transported electrons replaced by PS-II-splitting (oxidation) of water molecules (H2O), releasing protons (H+ ions) and oxygen into the thylakoid lumen.
* ...

(PD) Drawing: http://genomics.energy.gov/. Genome Management Information System, Oak Ridge National Laboratory. http://genomicscience.energy.gov/roadmap/ Genomics:GTL Roadmap, U.S. Department of Energy Office of Science, August 2005.
Add image caption here.

Organisms that photosynthesize operate as autotrophs -- viz., organisms that generate their own source of food-energy -- specifically referred to as photoautotrophs. They draw on minerals and other inorganic compounds from the environment and produce an ultimately photon-energy-derived complement of carbohydrates, proteins, lipids and nucleic acids that self-organize the photoautotophic organism. In doing so they directly, though blindly, offer themselves as a source of food-energy (e.g., as vegetables, fruits) for consumption by us humans and other organisms, so-called heterotrophs -- viz., organisms that feed on other organisms or on their energy-rich structural components -- and indirectly provide a source of food-energy in the form of the non-human heterotrophs that we humans consume (e.g., chicken, fish and other animals). Photosynthesizing cells also supply the sufficient amounts of oxygen they and we need to generate ATP and NADPH, and they consume the 'waste' CO2 produced in the process of generating ATP.

Not all photosynthesizing organisms produce oxygen. The specific physico-chemical reactions of those that do biologists refer to as oxygenic photosynthesis, and those that do not as 'anoxygenic' photosynthesis. As noted above, oxygenic photosynthesis accounts for nearly all of the oxygen in the atmosphere.

## Solar energy[edit]

Photosynthesizing organisms do not eat all of the photons available to them....

Figure X. Electromagnetic spectrum, showing the portion of the spectrum that our eyes can detect. From: NOAA Coral Reef Watch Tutorial coralreefwatch.noaa.gov

## References Cited and Notes in Text[edit]

1. ↑ 1.0 1.1 1.2 W. Vermass (2007) An Introduction to Photosynthesis and Its Applications.
2. ↑ Govindjee, Krogmann D. (2004) Discoveries in oxygenic photosynthesis (1727–2003): a perspective. Photosynthesis Research 80:15-57.
* "Oxygenic photosynthesis occurs in plants (angiosperms, gymnosperms, pteridophytes, and bryophytes), in green algae, and other multipigmented algae (e.g., red algae, brown algae, yellow algae, diatoms), and in prokaryotes (cyanobacteria, and prochlorophytes).
3. ↑ 3.0 3.1 Hall DO, Rao KK. (1999) Photosynthesis. 6th ed. Cambridge University Press. ISBN 0-521-64257-4. | Google Books preview.
4. ↑ 4.0 4.1 4.2 4.3 Blankenship RE (2002) Molecular Mechanisms of Photosynthesis. Wiley-Blackwell. ISBN 0632043210; ISBN 978-0632043217
5. ↑ 5.0 5.1 Govindjee Photosynthesis
6. ↑ 6.0 6.1 O. Morton (2008) Eating the Sun: How Plants Power the Planet. Harper Collins. ISBN 0007163649 , ISBN 978-0007163649
7. ↑ phototroph: 'an organism that obtains energy from light'. Beatty JT. (2002) On the natural selection and evolution of the aerobic phototrophic bacteria. Photosynthesis Research 73:109-114. | For the quote, Beatty cites: Madigan MT, Martinko JM and Parker J (2000) Brock Biology of Microorganisms. Prentice Hall, Upper Saddle River, New Jersey.
8. ↑ Some ocean bottom organisms can utilize energy released by radioactive chemical elements originating deep below the ocean bottom, to assemble their organic constituents, so a fringe of the biosphere might remain vital in the absence of sunlight.
9. ↑ Alvarez LW, Alvarez W, Asaro F, Michel HV. (1980) Extraterrestrial Cause for the Cretaceous-Tertiary Extinction. Science 208:1095-1108.
10. ↑ Hopkins WG. (2006) Photosynthesis and Respiration. Chelsea House. ISBN 978-0-7910-8561-5.
11. ↑ H.M. Weiss (2008), Appreciating Oxygen. The Journal of Chemical Education 85(9):1218-1219. This article stresses the importance of oxygen as an energy source in chemistry and bioligy.
12. ↑ M.J. Farabee (2007), What is photosynthesis? Online Biology Book Detailed teatment of photosynthesis in an online biology course textbook. Includes an illustrated glossary.
13. ↑ Photosynthesis Encyclopedia Britannica, Free Full-Text Article
14. ↑ John Whitmarsh, Govindjee. The Photosynthetic Process In: Concepts in Photobiology: Photosynthesis and Photomorphogenesis, Edited by G.S. Singhal, G. Renger, S.K. Sopory, K-D Irrgang and Govindjee, Narosa Publishers/New Delhi; and Kluwer Academic/Dordrecht, pp. 11-51. The online text is a revised and modified version of Photosynthesis by J. Whitmarsh and Govindjee (1995), published in Encyclopedia of Applied Physics (Vol. 13, pp. 513-532) by VCH Publishers, Inc. A detailed, comprehensive treatment of photosynthesis in a book chapter online. Includes history and research aspects.
15. ↑ P.H. Raven, R.F. Evert and S.E. Eichhorn (1999), Photosynthesis, Light, and Life'. Chapter 7. In: Biology of Plants, 6th ed., New York: W.H. Freeman. ISBN 1-57259-041-6; ISBN 1-57259-611-2
16. ↑ N.C. Kiang, J. Siefert, Govindjee and R.E. Blankenship (2007). Full text available at Spectral Signatures of Photosynthesis. I. Review of Earth Organisms An overview of: how photosynthesis works, the diversity of photosynthetic organisms, a synthesis of photosynthetic surface spectral signatures, and evolutionary rationales for photosynthetic surface reflectance spectra.
17. ↑ Note: Summary equations typically depict glucose as the carbohydrate end-product of photosynthesis, whereas photosynthesizing cells generate very little glucose per se; the three-carbon trioses represent the more immediate photosynthetic carbohydrate.