Chromosomal inversion

Short description: Chromosome rearrangement in which a segment of a chromosome is reversed

An inversion is a chromosome rearrangement in which a segment of a chromosome becomes inverted within its original position. An inversion occurs when a chromosome undergoes a two breaks within the chromosomal arm, and the segment between the two breaks inserts itself in the opposite direction in the same chromosome arm. The breakpoints of inversions often happen in regions of repetitive nucleotides, and the regions may be reused in other inversions.[1] Chromosomal segments in inversions can be as small as 100 kilobases or as large as 100 megabases. The number of genes captured by an inversion can range from a handful of genes to hundreds of genes.[2] Inversions can happen either through ectopic recombination, chromosomal breakage and repair, or non-homologous end joining.[3]

Inversions are of two types: paracentric and pericentric. Paracentric inversions do not include the centromere, and both breakpoints occur in one arm of the chromosome. Pericentric inversions span the centromere, and there is a breakpoint in each arm[4].

A clay model showing why heterozygous inversion loops are visible in polytene chromosome preparations An inversion loop in the A arm of a chromosome from an Axarus species midge

Inversions usually do not cause any abnormalities in carriers, as long as the rearrangement is balanced, with no extra or missing DNA. However, in individuals which are heterozygous for an inversion, there is an increased production of abnormal chromatids (this occurs when crossing-over occurs within the span of the inversion). This leads to lowered fertility, due to production of unbalanced gametes. Inversions do not involve either loss or gain of genetic information; they simply rearrange the linear DNA sequence.

## Contents

* 1 Detection
* 2 History
* 3 Effects on recombination
* 4 Evolutionary consequences
* 5 Nomenclature
* 6 Notable cases
* 7 References
* 8 Further reading

## Detection

Cytogenetic techniques may be able to detect inversions, or inversions may be inferred from genetic analysis. Nevertheless, in most species, small inversions go undetected. More recently, comparative genomics has been used to detect chromosomal inversions, by mapping the genome.[5][6] Population genomics may also be used to detect inversions, using areas of high linkage disequilibrium as indicators for possible inversion sites. Human families that may be carriers of inversions may be offered genetic counseling and genetic testing.[7]

## History

The first evidence of a chromosomal inversion was found in 1921 by Alfred Sturtevant in Drosophila melanogaster.[8] Since then, inversions have been found in a all eukaryotes.[2] When discovered by Sturtevant, inversions were regarded as areas of recombination suppression.

Originally, these inversions were noted in polytene chromosomes within the salivary glands of heterozygous Drosophila melanogaster larvae.[2] In 1970, Theodosius Dobzhansky noted that genes within an inversion had higher fitness than those that are found outside of the inversions, although this is an area that needs further study.[9]

One of the more recent models of inversions is the Kirkpatrick and Barton Model (2006), which states that inversions are selectively advantageous by linking together adaptive alleles. By physically linking co-adapted variants at multiple genes into distinct versions (haplotypes) of an inversion, selection should be more efficient in driving these variants to high frequency in a population. This is in contrast to non-inverted regions, which may allow adaptive and maladaptive alleles to be carried.[10]

Also, inversions may be used as detectors for global climate change. In Drosophila melanogaster , a study done in 2015 showed that a specific inversion (3R) may contribute to adaptions to climate change.[11] In the species Drosophila subobscura, researchers have been able to track global climate change by measuring the magnitude and directional shift in chromosome inversion frequencies, relative to temperatures at specific global sites.[12]

## Effects on recombination

When an inversion carrying chromosome is paired with a non-inverted homologous chromosome (Inversion heterozygotes) during meiosis, they fail to synapse properly and inversion loops are formed. A crossing-over within the loop can produce unbalanced gametes. In a paracentric inversion, recombination results in one dicentric chromatid and one acentric chromatid. During Anaphase, both recombinants are faced with problems. The acentric chromatid is pulled to one pole or the other, and the dicentric recombinant generates dicentric bridges as it is pulled in two directions.[13]

In a pericentric inversion, similar imbalanced chromosomes are produced. The recombinant chromosomes resulting from these crosses include deletions and duplications. The offspring produced by such gametes are mostly inviable, and therefore, recombination is indirectly suppressed within inverted regions.[13]

## Evolutionary consequences

The suppressed recombination between inversion heterozygotes provides an opportunity for the independent evolution of the ancestral and inverted arrangements. At the beginning, the inverted arrangement lacks variation, while the ancestral one does not. If the inverted haplotype is not lost (eg. due to drift), the variation in the inverted arrangement can increase over time, and recombination rate in the inverted region is somewhat restored as more homozygotes are introduced.[14]

Chromosomal inversions have gained a lot of attention in evolutionary research due to their potential role in local adaptation and speciation. Because non-recombining inversion haplotypes may harbor multiple co-adapted gene variants, inversions are thought to facilitate local adaptation to different environments because natural selection is more efficient in driving such linked adaptive variants to high frequency within a population.[15] However, empirically demonstrating the presence of linked, co-adapted gene variants within inversions is difficult because inversion haplotypes do not recombine. Moreover, this possible positive effect of chromosomal inversions for adaptation to different environments rests on the assumption that adaptive gene variants linked into distinct inversion haplotypes are indeed co-adapted. This idea is, however, likely violated in situations where populations experience spatially or temporally varying selection. Because of fluctuating selection on inversion-linked variants, the absence of recombination between inversion haplotypes harboring distinct gene variants may then constrain rather than help adaptation to distinct environments.[16] The importance of chromosomal inversions in adaptation to different environments therefore remains an open empirical problem in evolutionary genetics.

Inversion polymorphism can be established in two ways. Genetic drift or selection can result in fixation of an inversion in a local population. Inversion polymorphism can result from gene flow between this population and a population without the inversion. Balancing selection can also result in inversion polymorphism by frequency dependence or overdominance.[14] The fitness differences between the inverted and the ancestral chromosome can either produce a stable polymorphism or can result in the fixation of one or the other chromosome.[17]

Inversions have been essential to sex chromosome evolution. In mammals, the Y chromosome is unable to recombine with the X chromosome, almost along its entire length. This non-recombining portion results from a series of inversions that overlap. Decreased recombination rate between sex determining loci and sex-anatagonistic genes is favored by selection. This causes linkage disequilibrium between the male determining locus and an allele at another locus that is beneficial to males. This can happen through inversions resulting in a non-recombining block including both loci, as is the case in the mammalian Y chromosome.[17]

Inversions can also be essential in the origination of new sex chromosomes. They can cause linkage disequilibrium between a sex-determining mutation and sex-antagonistic loci and create a new sex chromosome from an autosome.[18]

Inversions can be involved in speciation in multiple ways. Since heterozygote inversions can be underdominant, they can cause hybrid fitness loss, resulting in post-zygotic isolation. They can also accumulate selected differences between species, causing both pre- and post-zygotic isolation.[17]

Inversions often form geographical clines in frequency which can hint to their role in local adaptation. A prominent instance of such a cline is inversion 3RP in Drosophila melanogaster that can be observed in three different continents.[17] When an inversion contains two or more locally adaptive alleles, it can be selected and spread. For example; in the butterfly Heliconius numata, 18 genes controlling colors are linked together by inversions as together they confer higher fitness.[19]

## Nomenclature

Three chromosomal abnormalities with ISCN nomenclature, with increasing complexity: (A) A tumour karyotype in a male with loss of the Y chromosome, (B) Prader–Willi Syndrome i.e. deletion in the 15q11-q12 region and (C) an arbitrary karyotype that involves a variety of autosomal and allosomal abnormalities including inversions (abbreviated as inv).[20] Human karyotype with annotated bands and sub-bands as used for the nomenclature of chromosome abnormalities. It shows dark and white regions as seen on G banding. Each row is vertically aligned at centromere level. It shows 22 homologous autosomal chromosome pairs as well as both the female (XX) and male (XY) versions of the two sex chromosomes.

Further information: Karyotype

The International System for Human Cytogenomic Nomenclature (ISCN) is an international standard for human chromosome nomenclature, which includes band names, symbols, and abbreviated terms used in the description of human chromosome and chromosome abnormalities. Abbreviations include inv for inversions.[21]

## Notable cases

* Brenden Adams: former holder of the Guinness World Record for tallest teenager. His height is caused by an inversion of chromosome 12.
* An example of chromosomal Inversion in organisms is demonstrated in the insect, Coelopa frigida. This particular species of Coelopa have a variation of chromosomal inversions that allow the species to create a series of physical differences. Individual C. frigida that are larger do not undergo a chromosomal inversion, whereas individuals that are smaller do undergo a chromosomal inversion.

## References

1. ↑ Corbett-Detig, Russell B; Said, Iskander; Calzetta, Maria; Genetti, Max; McBroome, Jakob; Maurer, Nicholas W; Petrarca, Vincenzo; della Torre, Alessandra et al. (2019-12-01). "Fine-Mapping Complex Inversion Breakpoints and Investigating Somatic Pairing in the Anopheles gambiae Species Complex Using Proximity-Ligation Sequencing" (in en). Genetics 213 (4): 1495–1511. doi:10.1534/genetics.119.302385. ISSN 1943-2631. PMID 31666292.
2. ↑ 2.0 2.1 2.2 Wellenreuther, Maren; Bernatchez, Louis (June 2018). "Eco-Evolutionary Genomics of Chromosomal Inversions" (in en). Trends in Ecology & Evolution 33 (6): 427–440. doi:10.1016/j.tree.2018.04.002. PMID 29731154.
3. ↑ Huang, Kaichi; Rieseberg, Loren H. (2020). "Frequency, Origins, and Evolutionary Role of Chromosomal Inversions in Plants". Frontiers in Plant Science 11: 296. doi:10.3389/fpls.2020.00296. ISSN 1664-462X. PMID 32256515.
4. ↑ Kirkpatrick, Mark (2010-09-28). "How and Why Chromosome Inversions Evolve" (in en). PLOS Biology 8 (9): e1000501. doi:10.1371/journal.pbio.1000501. ISSN 1545-7885. PMID 20927412.
5. ↑ Huang, Kaichi; Rieseberg, Loren H. (2020). "Frequency, Origins, and Evolutionary Role of Chromosomal Inversions in Plants". Frontiers in Plant Science 11: 296. doi:10.3389/fpls.2020.00296. ISSN 1664-462X. PMID 32256515.
6. ↑ Kirkpatrick, Mark (2010-09-28). "How and Why Chromosome Inversions Evolve" (in en). PLOS Biology 8 (9): e1000501. doi:10.1371/journal.pbio.1000501. ISSN 1545-7885. PMID 20927412.
7. ↑ Gardner, R.J.M; Sutherland, Grant R.; Shaffer, Lisa G. (2011). "9 Inversions". Chromosome Abnormalities and Genetic Counseling (4th ed.). Oxford University Press. pp. 161–182. ISBN 978-0-19-974915-7. https://books.google.com/books?id=mqNpAgAAQBAJ&pg=PA161.
8. ↑ Kirkpatrick, Mark (2010-09-28). "How and Why Chromosome Inversions Evolve" (in en). PLOS Biology 8 (9): e1000501. doi:10.1371/journal.pbio.1000501. ISSN 1545-7885. PMID 20927412.
9. ↑ Huang, Kaichi; Rieseberg, Loren H. (2020). "Frequency, Origins, and Evolutionary Role of Chromosomal Inversions in Plants". Frontiers in Plant Science 11: 296. doi:10.3389/fpls.2020.00296. ISSN 1664-462X. PMID 32256515.
10. ↑ Huang, Kaichi; Rieseberg, Loren H. (2020). "Frequency, Origins, and Evolutionary Role of Chromosomal Inversions in Plants". Frontiers in Plant Science 11: 296. doi:10.3389/fpls.2020.00296. ISSN 1664-462X. PMID 32256515.
11. ↑ Rane, Rahul V.; Rako, Lea; Kapun, Martin; Lee, Siu F.; Hoffmann, Ary A. (19 March 2015). "Genomic evidence for role of inversion 3RP of Drosophila melanogaster in facilitating climate change adaptation" (in en). Molecular Ecology 24 (10): 2423–2432. doi:10.1111/mec.13161. PMID 25789416. https://onlinelibrary.wiley.com/doi/10.1111/mec.13161.
12. ↑ Balanyá, Joan; Oller, Josep M.; Huey, Raymond B.; Gilchrist, George W.; Serra, Luis (2006-09-22). "Global Genetic Change Tracks Global Climate Warming in Drosophila subobscura" (in en). Science 313 (5794): 1773–1775. doi:10.1126/science.1131002. ISSN 0036-8075. PMID 16946033. Bibcode: 2006Sci...313.1773B. https://www.science.org/cms/asset/ab71f200-607f-4050-a778-0524e6fe5328/pap.pdf.
13. ↑ 13.0 13.1 "Concepts of Genetics". https://www.pearson.com/en-us/subject-catalog/p/concepts-of-genetics/P200000006954/9780135564776.
14. ↑ 14.0 14.1 Faria, Rui; Johannesson, Kerstin; Butlin, Roger K.; Westram, Anja M. (2019-03-01). "Evolving Inversions" (in en). Trends in Ecology & Evolution 34 (3): 239–248. doi:10.1016/j.tree.2018.12.005. ISSN 0169-5347. PMID 30691998.
15. ↑ Rieseberg, L.H. (2001). Chromosomal rearrangements and speciation. Trends in Ecology & Evolution, 16, 351-358.
16. ↑ Roesti, M., Gilbert, K. J., & Samuk, K. (2022). Chromosomal inversions can limit adaptation to new environments. Molecular Ecology, 31, 4435–4439. https://doi.org/10.1111/mec.16609
17. ↑ 17.0 17.1 17.2 17.3 Kirkpatrick, Mark (2010-09-28). "How and Why Chromosome Inversions Evolve" (in en). PLOS Biology 8 (9): e1000501. doi:10.1371/journal.pbio.1000501. ISSN 1545-7885. PMID 20927412.
18. ↑ van Doorn, G. S.; Kirkpatrick, M. (October 2007). "Turnover of sex chromosomes induced by sexual conflict". Nature 449 (7164): 909–912. doi:10.1038/nature06178. ISSN 0028-0836. PMID 17943130. Bibcode: 2007Natur.449..909V.
19. ↑ Joron, Mathieu; Frezal, Lise; Jones, Robert T.; Chamberlain, Nicola L.; Lee, Siu F.; Haag, Christoph R.; Whibley, Annabel; Becuwe, Michel et al. (September 2011). "Chromosomal rearrangements maintain a polymorphic supergene controlling butterfly mimicry" (in en). Nature 477 (7363): 203–206. doi:10.1038/nature10341. ISSN 1476-4687. PMID 21841803. Bibcode: 2011Natur.477..203J.
20. ↑ "A fully computational and reasonable representation for karyotypes.". Bioinformatics 35 (24): 5264–5270. 2019. doi:10.1093/bioinformatics/btz440. PMID 31228194.
\- "This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/)"
21. ↑ "ISCN Symbols and Abbreviated Terms". https://www.coriell.org/0/sections/support/global/iscn_help.aspx?PgId=263.

## Further reading

* "Phylogenetic analysis of non-coding plastid DNAthtjtdjj in the presence of short inversions" (PDF-preview). Phytotaxa 1: 3–20. 2009. doi:10.11646/phytotaxa.1.1.2. https://www.mapress.com/phytotaxa/content/2009/f/p00001p020f.pdf.

* v
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Cytogenetics: chromosomes

Basic
concepts|

* Karyotype
* Ploidy
* Genetic material/Genome
* Chromatin
* Euchromatin
* Heterochromatin
* Chromosome
* Chromatid
* Nucleosome
* Nuclear organization

Types|

* Autosome/Sex chromosome (or allosome or heterosome)
* Macrochromosome/Microchromosome
* Circular chromosome/Linear chromosome
* Extra chromosome (or accessory chromosome)
* Supernumerary chromosome
* A chromosome/B chromosome
* Lampbrush chromosome
* Polytene chromosome
* Dinoflagellate chromosomes
* Homologous chromosome
* Isochromosome
* Satellite chromosome
* Centromere position
* Metacentric
* Submetacentric
* Telocentric
* Acrocentric
* Holocentric
* Centromere number
* Acentric
* Monocentric
* Dicentric
* Polycentric

Processes
and evolution|

* Mitosis
* Meiosis
* Structural alterations
* Chromosomal inversion
* Chromosomal translocation
* Numerical alterations
* Aneuploidy
* Euploidy
* Polyploidy
* Paleopolyploidy
* Polyploidization

Structures|

* Telomere: Telomere-binding protein (TINF2)
* Protamine

| Histone|

* H1
* H2A
* H2B
* H3
* H4

|

Centromere|

* A
* B
* C1
* C2
* E
* F
* H
* I
* J
* K
* M
* N
* O
* P
* Q
* T

See also|

* Extrachromosomal DNA
* Plasmid
* List of organisms by chromosome count
* List of sequenced genomes
* International System for Human Cytogenetic Nomenclature

* v
* t
* e

Mutation

Mechanisms of mutation|

* Insertion
* Deletion
* Substitution
* Transversion
* Transition

Mutation with respect to structure|

| Point mutation|

* Nonsense mutation
* Missense mutation
* Conservative mutation
* Silent mutation
* Frameshift mutation
* Dynamic mutation

|

Large-scale mutation|

* Chromosomal translocations
* Chromosomal inversions

Mutation with respect to overall fitness|

* Deleterious mutation
* Advantageous mutation
* Neutral mutation
* Nearly neutral mutation

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