Deinococcus geothermalis

Short description: Species of bacterium

Deinococcus geothermalis

Scientific classification
Domain:  | Bacteria
Phylum:  | Deinococcota
Class:  | Deinococci
Order:  | Deinococcales
Family:  | Deinococcaceae
Genus:  | Deinococcus
Species:  |

D. geothermalis

Binomial name
Deinococcus geothermalis

Ferreira et al. 1997

Deinococcus geothermalis is a non-pathogenic, sphere-shaped, Gram-positive, heterotrophic bacterium, where geothermalis means 'hot earth' or 'hot springs'. This bacterium was first obtained from the hot springs of Agnano, Naples, Italy and São Pedro do Sul, Portugal.[1] It resides primarily in hot springs and in deep ocean environments.[2]

## Contents

* 1 Genome Structure
* 2 Growth Characteristics
* 3 Biofilm Formation
* 4 Oxidative Stress
* 5 Bioremediation
* 6 Resistance in Harsh Environments
* 7 References
* 8 External links

## Genome Structure

Comparative of the genomes found in the genus, Deinococcus

Deinococcus geothermalis has a genome that contains 2.47 Mbp with 2,335 protein coding genes. There are 73 insertion sequences (IS) contained in the genome, with 19 different types of ISs'.[3] Upon oxidative stress these ISs' are actively transposed in the bacterium.[4] Additionally, it carries at least 2 plasmids.[5]

## Growth Characteristics

Deniococcus geothermalis form tetrads when dividing. The size of their cells range from 1.2 - 2.0μm in diameter. It produces orange-pigmented colonies and has an optimum growth temperature of about 45 °C (113 °F) to 50 °C (122 °F), which is the limit between mesophile and thermophile organisms. As well as having a pH optimum of 6.5. Given all this, they are able to grow in environments where nutrients are limited, and can even use ammonium sulfate for biomass accumulation.[6] It is extremely gamma radiation-resistant. Mn(II) concentrations are high in the cell.[7] Fe(III)-nitrilotriacetic acid, U(V), and Cr(VI) can all be reduced by D. geothermalis, which has also been engineered to reduce Hg(II) as well, from a plasmid originally constructed for Deinococcus radiodurans. Its type strain is AG-3a (= DSM 11300).[1]

## Biofilm Formation

It is able to form thick biofilms on non-living surfaces, such as printing machines, glass, stainless steel, polystyrenes, polyethylene, etc., which are characterized by adhesion threads and lack of a slime matrix. Biofilms were visualized with high resolution field-emission scanning electron microscopy and atomic force microscopy (AMF). In particular, Deniococcus geothermalis biofilms on printing equipment can help other bacteria form biofilms on top of the existing one, referred to as a secondary biofilm bacterium. Their biofilms are tightly adhered to surfaces, making them hard to remove. They do not possess any means of motility and/or attachment, like a pili or flagella. Attachment is assisted by extracellular polymeric substances (EPS) with adhesion being mixed on the surface of the cell, rather than uniformly spread. Despite its strong attachment to a surface, the biofilms of unsecured attached cells can move in water.[8]

## Oxidative Stress

In an environment lacking manganese (under aerobic conditions), Deniococcus geothermalis cells will undergo oxidative stress. It is proposed that in this lack, D. geothermalis prefers to utilize any available carbon for metabolism that reduces oxidative stress or reactive oxygen species (ROS). Additionally, there are protein repair enzymes that the bacterium can use to combat oxidative stress, as well as up-regulating catalase and superoxide dismutase. Along these lines, NAPH is used over NADH upon carbon accumulation.[2]

## Bioremediation

Many toxic waste sites have contaminates that are protected by high heat. Due to the organisms reduction of radioactive materials and ability to withstand high temperatures, it has been proposed they be utilized in bioremediation efforts against toxic habitats. It has an advantage over the closely related, Deinococcus radiodurans, in particular when dealing with waste environments, because its optimum growth temperature is higher, versus D. radiodurans, which is around 39 °C.[6]

## Resistance in Harsh Environments

A space mission called EXPOSE-R2 was launched on 24 July 2014 aboard the Russian Progress M-23M,[9] and was attached on 18 August 2014 outside the ISS on the Russian module Zvezda.[10] The two main experiments will test the resistance of a variety of extremophile microorganisms biofilms and planktonic cells, including Deinococcus geothermalis to long-term exposure to outer space and to a Mars simulated environment.[11] In particular, they were interested in finding if the biofilms of extremophiles were able to survive in the rough conditions of outer space and/or any other parts of the universe. After 2 years, the mission was able to reveal that D. geothermalis biofilms and planktonic cells survived desiccation, UV radiation, and harsh Mars-like conditions.[12]

## References

1. ↑ 1.0 1.1 Ferreira, A. C.; Nobre, M. F.; Rainey, F. A.; Silva, M. T.; Wait, R.; Burghardt, J.; Chung, A. P.; Da Costa, M. S. (1997). "Deinococcus geothermalis sp. nov. and Deinococcus murrayi sp. nov., Two Extremely Radiation-Resistant and Slightly Thermophilic Species from Hot Springs". International Journal of Systematic Bacteriology 47 (4): 939–947. doi:10.1099/00207713-47-4-939. ISSN 0020-7713. PMID 9336890.
2. ↑ 2.0 2.1 Liedert, Christina; Peltola, Minna; Bernhardt, Jörg; Neubauer, Peter; Salkinoja-Salonen, Mirja (2012-03-15). "Physiology of Resistant Deinococcus geothermalis Bacterium Aerobically Cultivated in Low-Manganese Medium" (in en). Journal of Bacteriology 194 (6): 1552–1561. doi:10.1128/JB.06429-11. ISSN 0021-9193. PMID 22228732. PMC 3294853. https://journals.asm.org/doi/10.1128/JB.06429-11.
3. ↑ Shin, Eunjung; Ye, Qianying; Lee, Sung-Jae (2022). "Active Transposition of Insertion Sequences in Prokaryotes: Insights from the Response of Deinococcus geothermalis to Oxidative Stress" (in en). Antioxidants 11 (3): 481. doi:10.3390/antiox11030481. ISSN 2076-3921. PMID 35326130.
4. ↑ Lee, Chanjae; Choo, Kyungsil; Lee, Sung-Jae (2020). "Active Transposition of Insertion Sequences by Oxidative Stress in Deinococcus geothermalis". Frontiers in Microbiology 11. doi:10.3389/fmicb.2020.558747. ISSN 1664-302X. PMID 33224109.
5. ↑ Makarova, KS.; Omelchenko, MV.; Gaidamakova, EK.; Matrosova, VY.; Vasilenko, A.; Zhai, M.; Lapidus, A.; Copeland, A. et al. (2007). "Deinococcus geothermalis: the pool of extreme radiation resistance genes shrinks". PLOS ONE 2 (9): e955. doi:10.1371/journal.pone.0000955. PMID 17895995. Bibcode: 2007PLoSO...2..955M.
6. ↑ 6.0 6.1 Brim, Hassan; Venkateswaran, Amudhan; Kostandarithes, Heather M.; Fredrickson, James K.; Daly, Michael J. (2003). "Engineering Deinococcus geothermalis for Bioremediation of High-Temperature Radioactive Waste Environments" (in en). Applied and Environmental Microbiology 69 (8): 4575–4582. doi:10.1128/AEM.69.8.4575-4582.2003. ISSN 0099-2240. PMID 12902245. Bibcode: 2003ApEnM..69.4575B.
7. ↑ Daly, M. J.; Gaidamakova, E. K.; Matrosova, V. Y.; Vasilenko, A.; Zhai, M.; Venkateswaran, A.; Hess, M.; Omelchenko, M. V. et al. (2004-11-05). "Accumulation of Mn(II) in Deinococcus radiodurans Facilitates Gamma-Radiation Resistance" (in en). Science 306 (5698): 1025–1028. doi:10.1126/science.1103185. ISSN 0036-8075. PMID 15459345. Bibcode: 2004Sci...306.1025D. https://www.science.org/doi/10.1126/science.1103185.
8. ↑ Kolari, M.; Schmidt, U.; Kuismanen, E.; Salkinoja-Salonen, M. S. (2002). "Firm but Slippery Attachment of Deinococcus geothermalis" (in en). Journal of Bacteriology 184 (9): 2473–2480. doi:10.1128/JB.184.9.2473-2480.2002. ISSN 0021-9193. PMID 11948162.
9. ↑ Gronstal, Aaron L. (31 July 2014). "Exploring Mars in low Earth orbit". NASA's Astrobiology Magazine. http://phys.org/news/2014-07-exploring-mars-earth-orbit.html.
10. ↑ Kramer, Miriam (18 August 2014). "Russian Cosmonaut Tosses Satellite for Peru During Spacewalk". Space.com. http://www.space.com/26841-spacewalking-cosmonaut-launches-peru-satellite-video.html.
11. ↑ BOSS on EXPOSE R2 Comparative Investigations on Biofilm and Planktonic cells of Deinococcus geothermalis as Mission Preparation Tests. EPSC Abstracts. Vol. 8, EPSC2013-930, 2013. European Planetary Science Congress 2013.
12. ↑ Panitz, Corinna; Frösler, Jan; Wingender, Jost; Flemming, Hans-Curt; Rettberg, Petra (2019). "Tolerances of Deinococcus geothermalis Biofilms and Planktonic Cells Exposed to Space and Simulated Martian Conditions in Low Earth Orbit for Almost Two Years" (in en). Astrobiology 19 (8): 979–994. doi:10.1089/ast.2018.1913. ISSN 1531-1074. PMID 30925079. Bibcode: 2019AsBio..19..979P. https://www.liebertpub.com/doi/10.1089/ast.2018.1913.

## External links

* LPSN
* Type strain of Deinococcus geothermalis at BacDive \- the Bacterial Diversity Metadatabase

Wikidata ☰ Q16955589 entry

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