Organic geochemistry

Organic geochemistry is the study of the impacts and processes that organisms have had on the Earth. It is mainly concerned with the composition and mode of origin of organic matter in rocks and in bodies of water.[1] The study of organic geochemistry is traced to the work of Alfred E. Treibs, "the father of organic geochemistry."[2] Treibs first isolated metalloporphyrins (derivatives of hemes, etc.) from petroleum. This discovery established the biological origin of petroleum, which was previously poorly understood.[3] Metalloporphyrins in general are highly stable organic compounds, and the detailed structures of the extracted derivatives made clear that they originated from chlorophyll. But the field, as such, didn't really develop until the latter half of the twentieth century, when natural products chemists began trying to understand and track the transformations of natural products produced by organisms over geologic time\--in marine sediments, rocks, oil, and coal. This led to development of ever-more-sophisticated and sensitive methods of spectroscopic analysis. Early applications included trying to identify the first traces of microbial life on earth in ancient rocks and ascertaining whether there were any signs of past or present life in the first samples of Lunar dust, as well as exploration for new petroleum deposits.[4]

## Contents

* 1 Applications
* 1.1 Petroleum
* 1.2 Coal
* 1.3 Earth history and geobiology
* 1.4 Microbiology
* 1.5 Environmental
* 2 See also
* 3 Further reading
* 4 References

## Applications

### Petroleum

Carbon cycle diagram

The relationship between the occurrence of organic compounds in sedimentary deposits and petroleum deposits has long been of interest.[5] Studies of ancient sediments and rock provide insights into the origins and sources of oil and petroleum, as well as the biochemical antecedents of life. Oil spills in particular have been of interest to geochemists in regards to the impact of petroleum and oil on the current geological environment. Following the Exxon Valdez Oil Spill, organic geochemistry knowledge on oil-spill chemistry bloomed with the analyses of samples from the spill.[6]

Geochemists study petroleum-inclusions in geological samples to compare present-day fluid-inclusions to dated samples. This analysis provides insight into the age of the petroleum samples and the surrounding rock. Spectrographic, optical, destructive, and nondestructive methods are used to analyze samples via mass spectrometry or Raman spectroscopy. The discovered differences in samples, such as oil-to-gas ratio or viscosity are typically attributed to the rock source of the sample. Other characteristics typically noted are pressure/volume/temperature properties, sample texture, and sample composition. Complications in analysis arise when the source rock is near or in a water source.[7]

Carbon-13 Placement in Isotope Chart where N is number of neutrons and Z is atomic number

Petroleum is also studied via carbon isotope analysis. Carbon isotopes provide insight into the Earth's carbon cycle and geological processes. Geochemists are able to discern the composition of petroleum deposits by examining the ratio of carbon isotopes and comparing this ratio to known values for carbon based structures of which the petroleum could be composed.[8]

### Coal

Vast knowledge about coal has been attained since the inception of its use as an energy source. Geochemists have determined that coalification results from a selective degradation of plant materials, while other plant material is preserved. Coal macromolecules are usually derived from degradation-resistant biopolymers contained in algae, spores, and wood. The analytical methods of Carbon NMR and gas chromatography-mass spectrometry (GC-MS) combined with flash pyrolysis has greatly enhanced the analyse.[9]

Example of isochron dating diagram and analysis

Further knowledge into the age of coal sediments has been attained via isochron dating of uranium in the coalified samples. Examination of the parent to daughter ratio of uranium isotopes has led to the dating of select samples to the Late Cretaceous Period.[10]

### Earth history and geobiology

Organic geochemistry is used in the analysis of ancient sediments and rocks to elucidate paleoenvironments, paleoclimates, and the evolution of earth's biogeochemical cycles since the advent of life.[11][12][13] The study of biomarkers in extreme environments on the contemporary earth (e.g. hydrothermal vents, deep biosphere) serves to delimit the possibilities and types of life that may have existed on the early earth and on other planets with similar conditions.[14]

### Microbiology

Organic geochemical biomarkers (biosignatures) have led to the discovery new forms of microbial life in sediments and soils, as well as oceans, lakes, and hydrothermal systems.[15]

### Environmental

Organic geochemistry includes studies of recent sediments to understand the carbon cycle, climate change, and ocean processes. The impact of petroleum on the geological environment has attracted interest.[16] Geochemistry also examines other pollutants in geological systems, such as metabolites formed from the degradation of hydrocarbons. Organic geochemistry analytical techniques, such as GC-MS, allow chemists to determine the intricate effects of organic metabolites and human-derived waste products on the geological environment.[17] Of specific concern are the human-derived pollutants stemming from agricultural work. The use of animal manure, in combination with general municipal and sewage waste management, has changed many physical properties of the agricultural soil involved and the surrounding soils.[18]

Organic geochemistry is also relevant to aqueous environments. Pollutants, their metabolites, and how both enter bodies of water are of particular importance in the field. This organic matter can also be derived from geological processes in or near bodies of water, similarly influencing nearby lifeforms and protein production. Fluorescence spectroscopy has been introduced as a technique to examine organic matter in bodies of water, as dissolved organic matter is typically fluorescent.[19]

File:Aerosol Movement.ogv The study of organic geochemistry also extends to the atmosphere. Particularly, geochemists in this field study the makeup of insoluble material in the lower atmosphere. They have defined certain consequences of organic aerosols including physiological toxicity, direct and indirect climate forcing, smog, rain acidification, and incorporation into the natural carbon cycle.[20]

## See also

* Geochemistry
* Biosignature, or biomarker, a fossil organic molecule that provides evidence of past or present life
* Biogeochemistry

## Further reading

* Engel, Michael; Macko, Stephen A. (1993). Organic Geochemistry Principles and Applications. Boston, MA: Springer US. ISBN 9781461528906.
* Killops, Stephen D.; Killops, Vanessa J. (2013). Introduction to Organic Geochemistry. John Wiley & Sons. ISBN 9781118697207.

## References

1. ↑ Hobson, G. D. (1966-01-01). "The organic geochemistry of petroleum" (in en). Earth-Science Reviews 2: 257–276. doi:10.1016/0012-8252(66)90031-6. ISSN 0012-8252. Bibcode: 1966ESRv....2..257H.
2. ↑ Kvenvolden, Keith A. (2006). "Organic geochemistry – A retrospective of its first 70 years". Organic Geochemistry. 37: 1–11. doi:10.1016/j.orggeochem.2005.09.001
3. ↑ Treibs, A.E. (1936). "Chlorophyll- und Häminderivate in organischen Mineralstoffen". Angewandte Chemie. 49: 682–686. doi:10.1002/ange.19360493803
4. ↑ Gaines, Susan M.; Eglinton, G.; Rullkötter, J. (2009). Echoes of life: what fossil molecules reveal about earth history. Oxford ; New York: Oxford University Press. ISBN 978-0-19-517619-3.
5. ↑ Trask, P.D. "Origin and Environment of Source Sediments" The Gulf Publishing Co., 1932, Houston, TX
6. ↑ A.E. Bence, K.A. Kvenvolden, M.C. Kennicutt, Organic geochemistry applied to environmental assessments of Prince William Sound, Alaska, after the Exxon Valdez oil spill—a review, Organic Geochemistry, Volume 24, Issue 1,1996, 7-42, https://doi.org/10.1016/0146-6380(96)00010-1.
7. ↑ Herbert Volk, Simon C. George, Using Petroleum Inclusions to Trace Petroleum Systems – A Review, Organic Geochemistry, 2019 https://doi.org/10.1016/j.orggeochem.2019.01.012.
8. ↑ Stahl W.J. (1979) Carbon Isotopes in Petroleum Geochemistry. In: Jäger E., Hunziker J.C. (eds) Lectures in Isotope Geology. Springer, Berlin, Heidelberg
9. ↑ Patrick G Hatcher, David J Clifford, The organic geochemistry of coal: from plant materials to coal, Organic Geochemistry, Volume 27, Issues 5–6, 1997,251-274, https://doi.org/10.1016/S0146-6380(97)00051-X.
10. ↑ Breger, I.A. (1974). The role of organic matter in the accumulation of uranium: the organic geochemistry of the coal-uranium association. International Atomic Energy Agency (IAEA): IAEA.
11. ↑ Sachs, J.P.; Pahnke, K.; Smittenberg, R.; Zhang, Z. (2013), "PALEOCEANOGRAPHY, BIOLOGICAL PROXIES | Biomarker Indicators of Past Climate" (in en), Encyclopedia of Quaternary Science (Elsevier): pp. 775–782, doi:10.1016/b978-0-444-53643-3.00280-6, ISBN 978-0-444-53642-6, https://linkinghub.elsevier.com/retrieve/pii/B9780444536433002806, retrieved 2026-01-31
12. ↑ Grauel, Anna-Lena; Leider, Arne; Goudeau, Marie-Louise S.; Müller, Inigo A.; Bernasconi, Stefano M.; Hinrichs, Kai-Uwe; de Lange, Gert J.; Zonneveld, Karin A.F. et al. (August 2013). "What do SST proxies really tell us? A high-resolution multiproxy (UK′37, TEXH86 and foraminifera δ18O) study in the Gulf of Taranto, central Mediterranean Sea" (in en). Quaternary Science Reviews 73: 115–131. doi:10.1016/j.quascirev.2013.05.007. https://linkinghub.elsevier.com/retrieve/pii/S0277379113001698.
13. ↑ Luo, Genming; Yang, Huan; Algeo, Thomas J.; Hallmann, Christian; Xie, Shucheng (2019-02-01). "Lipid biomarkers for the reconstruction of deep-time environmental conditions". Earth-Science Reviews. Sedimentology as a Key to Understanding Earth and Life Processes 189: 99–124. doi:10.1016/j.earscirev.2018.03.005. ISSN 0012-8252. https://www.sciencedirect.com/science/article/pii/S0012825217304609.
14. ↑ Schubotz, F.; Meyer‐Dombard, D. R.; Bradley, A. S.; Fredricks, H. F.; Hinrichs, K.‐U.; Shock, E. L.; Summons, R. E. (November 2013). "Spatial and temporal variability of biomarkers and microbial diversity reveal metabolic and community flexibility in Streamer Biofilm Communities in the L ower G eyser B asin, Y ellowstone N ational P ark" (in en). Geobiology 11 (6): 549–569. doi:10.1111/gbi.12051. ISSN 1472-4677. https://onlinelibrary.wiley.com/doi/10.1111/gbi.12051.
15. ↑ Hinrichs, Kai-Uwe; Hayes, John M.; Sylva, Sean P.; Brewer, Peter G.; DeLong, Edward F. (April 1999). "Methane-consuming archaebacteria in marine sediments" (in en). Nature 398 (6730): 802–805. doi:10.1038/19751. ISSN 0028-0836. https://www.nature.com/articles/19751.
16. ↑ A.E. Bence, K.A. Kvenvolden, M.C. Kennicutt, Organic geochemistry applied to environmental assessments of Prince William Sound, Alaska, after the Exxon Valdez oil spill—a review, Organic Geochemistry, Volume 24, Issue 1,1996, 7-42, https://doi.org/10.1016/0146-6380(96)00010-1.
17. ↑ Hans H. Richnow, Richard Seifert, Jens Hefter, Matthias Kästner, Bernd Mahro, Walter Michaelis, Metabolites of xenobiotica and mineral oil constituents linked to macromolecular organic matter in polluted environments, Organic Geochemistry, Volume 22, Issues 3–5,1994, 671-IN10, https://doi.org/10.1016/0146-6380(94)90132-5.
18. ↑ Khaleel, R., K. R. Reddy, and M. R. Overcash. 1981. Changes in Soil Physical Properties Due to Organic Waste Applications: A Review1. J. Environ. Qual. 10:133-141. doi:10.2134/jeq1981.00472425001000020002x
19. ↑ Hudson, N., Baker, A. and Reynolds, D. (2007), Fluorescence analysis of dissolved organic matter in natural, waste and polluted waters—a review. River Res. Applic., 23: 631-649. doi:10.1002/rra.1005
20. ↑ Jacobson, M. C., H.‐C. Hansson, K. J. Noone, and R. J. Charlson (2000), Organic atmospheric aerosols: Review and state of the science, Rev. Geophys., 38(2), 267–294, doi:10.1029/1998RG000045.

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