Reverse transcriptase

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In biochemistry, a reverse transcriptase, also known as RNA-dependent DNA polymerase, is a DNA polymerase enzyme that transcribes single-stranded RNA into single-stranded DNA. Normal transcription involves the synthesis of RNA from DNA; hence, reverse transcription is the reverse of this.

Reverse transcriptase was discovered by Howard Temin at the University of Wisconsin-Madison, and independently by David Baltimore in 1970. The two shared the 1975 Nobel Prize in Physiology or Medicine with Renato Dulbecco for their discovery.

Commonly used examples of reverse transcriptases include:

* HIV-1 reverse transcriptase from the human immunodeficiency virus type 1 (PDB: 1HMV​)
* M-MLV reverse transcriptase from the Moloney murine leukemia virus
* AMV reverse transcriptase from the avian myeloblastosis virus
* Telomerase reverse transcriptase that maintains the telomeres of eukaryotic chromosomes

## Contents

* 1 Function
* 1.1 Viruses
* 1.2 Eukaryotes
* 1.3 Prokaryotes
* 2 Structure
* 3 Replication fidelity
* 4 Applications
* 4.1 Antiviral drugs
* 4.2 Molecular biology
* 5 See also
* 6 External links
* 7 References

## Function

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### Viruses

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The enzyme is encoded and used by reverse-transcribing viruses, which use the enzyme during the process of replication. Reverse-transcribing RNA viruses, such as retroviruses, use the enzyme to reverse-transcribe their RNA genomes into DNA, which is then integrated into the host genome and replicated along with it. Reverse-transcribing DNA viruses, such as the hepadnaviruses, transcribe their genomes into an RNA intermediate and then, using reverse transcriptase, back into DNA.

### Eukaryotes

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Self-replicating stretches of eukaryotic genomes known as retrotransposons utilise reverse transcriptase to move from one position in the genome to another via a RNA intermediate. They are found abundantly in the genomes of plants and animals. Telomerase is another reverse transcriptase found in many eukaryotes, including humans, which carries its own RNA template; this RNA is used as a template for DNA replication[1].

### Prokaryotes

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Reverse transcriptases are also found in bacterial retrons, distinct sequences which code for reverse transcriptase, and are used in the synthesis of msDNA.

## Structure

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Reverse transcriptase enzymes include an RNA-dependent DNA polymerase and a DNA-dependent DNA polymerase, which work together to perform transcription. In addition to the transcription function, retroviral reverse transcriptases have a domain belonging to the RNase H family which is vital to their replication.

## Replication fidelity

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Reverse transcriptase has a high error rate when transcribing RNA into DNA since, unlike DNA polymerases, it has no proofreading ability. This high error rate allows mutations to accumulate at an accelerated rate relative to proofread forms of replication. The commercially available reverse transcriptases produced by Promega are quoted by their manuals as having error rates in the range of 1 in 17,000 bases for AMV and 1 in 30,000 bases for M-MLV[2]

## Applications

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The molecular structure of zidovudine (Retrovir®), a drug used to inhibit HIV reverse transcriptase

### Antiviral drugs

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Further information: Reverse transcriptase inhibitor

As HIV uses reverse transcriptase to copy its genetic material and generate new viruses (part of a retrovirus proliferation circle), specific drugs have been designed to disrupt the process and thereby suppress its growth. Collectively, these drugs are known as reverse transcriptase inhibitors and include the nucleoside and nucleotide analogues zidovudine (Retrovir®), lamivudine (Epivir®) and tenofovir (Viread®), as well as non-nucleoside inhibitors, such as nevirapine (Viramune®).

### Molecular biology

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Further information: Reverse transcription polymerase chain reaction

Reverse transcriptase is commonly used in research to apply the polymerase chain reaction technique to RNA in a technique called reverse transcription polymerase chain reaction (RT-PCR). The classical PCR technique can only be applied to DNA strands, but with the help of reverse transcriptase, RNA can be transcribed into DNA, thus making PCR analysis of RNA molecules possible. Reverse transcriptase is also used to create cDNA libraries from mRNA. The commercial availability of reverse transcriptase greatly improved knowledge in the area of molecular biology as, along with other enzymes, it allowed scientists to clone, sequence and characterise DNA.

## See also

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* cDNA library
* DNA polymerase
* msDNA
* Reverse transcribing virus
* RNA polymerase
* Telomerase
* Retrotransposon marker

## External links

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* animation of reverse transcriptase action and three reverse transcriptase inhibitors
* Molecule of the month (September 2002) at the Protein Data Bank
* BRENDA database entry \- highly detailed information from a protein database
* RNA+Transcriptase at the US National Library of Medicine Medical Subject Headings (MeSH)
* EC 2.7.7.49

## References

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1. ↑ Lodish, et al, Molecular Cell Biology (2004), 5th edn, W. H. Freeman and Company, New York, ISBN 0-7167-4366-3
2. ↑ Promega kit instruction manual (1999)

* v
* t
* e

Transferases: phosphorus-containing groups (EC 2.7)

2.7.1-2.7.4:
phosphotransferase/kinase
(PO4)|

| 2.7.1: OH acceptor|

* Hexo-
* Gluco-
* Fructo-
* Hepatic
* Galacto-
* Phosphofructo-
* 1
* Liver
* Muscle
* Platelet
* 2
* Riboflavin
* Shikimate
* Thymidine
* ADP-thymidine
* NAD+
* Glycerol
* Pantothenate
* Mevalonate
* Pyruvate
* Deoxycytidine
* PFP
* Diacylglycerol
* Phosphoinositide 3
* Class I PI 3
* Class II PI 3
* Sphingosine
* Glucose-1,6-bisphosphate synthase

|

2.7.2: COOH acceptor|

* Phosphoglycerate
* Aspartate kinase

2.7.3: N acceptor|

* Creatine

2.7.4: PO4 acceptor|

* Phosphomevalonate
* Adenylate
* Nucleoside-diphosphate
* Uridylate
* Guanylate
* Thiamine-diphosphate

2.7.6: diphosphotransferase
(P2O7)|

* Ribose-phosphate diphosphokinase
* Thiamine diphosphokinase

2.7.7: nucleotidyltransferase
(PO4-nucleoside)|

| Polymerase|

| DNA polymerase|

DNA-directed DNA polymerase

III

RNA-directed DNA polymerase
Reverse transcriptase

Telomerase

DNA nucleotidylexotransferase/Terminal deoxynucleotidyl transferase

|

RNA nucleotidyltransferase|

RNA polymerase/DNA-directed RNA polymerase
RNA polymerase I

III

Primase
RNA-dependent RNA polymerase

PNPase

Phosphorolytic
3' to 5' exoribonuclease|

* RNase PH
* PNPase

Nucleotidyltransferase|

* UTP—glucose-1-phosphate uridylyltransferase
* Galactose-1-phosphate uridylyltransferase

Guanylyltransferase|

* mRNA capping enzyme

Other|

* Recombinase (Integrase)
* Transposase

2.7.8: miscellaneous|

| Phosphatidyltransferases|

* CDP-diacylglycerol—glycerol-3-phosphate 3-phosphatidyltransferase
* CDP-diacylglycerol—serine O-phosphatidyltransferase
* CDP-diacylglycerol—inositol 3-phosphatidyltransferase
* CDP-diacylglycerol—choline O-phosphatidyltransferase

|

Glycosyl-1-phosphotransferase|

* N-acetylglucosamine-1-phosphate transferase

2.7.10-2.7.13: protein kinase
(PO4; protein acceptor)|

| 2.7.10: protein-tyrosine|

* see tyrosine kinases

|

2.7.11: protein-serine/threonine|

* see serine/threonine-specific protein kinases

2.7.12: protein-dual-specificity|

* see serine/threonine-specific protein kinases

2.7.13: protein-histidine|

* Protein-histidine pros-kinase
* Protein-histidine tele-kinase
* Histidine kinase

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