CROT (gene)

Protein-coding gene in the species Homo sapiens

CROT

| Available structures

PDB| Ortholog search: PDBe RCSB
| List of PDB id codes

1XL7, 1XL8, 1XMC, 1XMD

Identifiers
Aliases| CROT, COT, carnitine O-octanoyltransferase
External IDs| OMIM: 606090; MGI: 1921364; HomoloGene: 10899; GeneCards: CROT; OMA:CROT - orthologs
| Gene location (Human)

Chr.| Chromosome 7 (human)[1]

Band| 7q21.12| Start| 87,345,664 bp[1]
End| 87,399,794 bp[1]
| Gene location (Mouse)

Chr.| Chromosome 5 (mouse)[2]

Band| 5|5 A1| Start| 9,016,033 bp[2]
End| 9,047,324 bp[2]
| RNA expression pattern

Bgee| | Human| Mouse (ortholog)

|

| Top expressed in

* seminal vesicula

* jejunal mucosa

* mucosa of urinary bladder

* skin of thigh

* duodenum

* palpebral conjunctiva

* urethra

* hair follicle

* gingival epithelium

* epithelium of nasopharynx

| Top expressed in

* left lobe of liver

* right kidney

* human kidney

* epithelium of small intestine

* proximal tubule

* lacrimal gland

* jejunum

* esophagus

* duodenum

* ileum

More reference expression data
BioGPS| |

More reference expression data
| Gene ontology

Molecular function|

* transferase activity
* signaling receptor binding
* acyltransferase activity
* carnitine O-octanoyltransferase activity

Cellular component|

* intracellular membrane-bounded organelle
* peroxisome
* peroxisomal matrix
* cytosol

Biological process|

* medium-chain fatty acid metabolic process
* coenzyme A metabolic process
* lipid metabolism
* fatty acid transport
* generation of precursor metabolites and energy
* fatty acid metabolic process
* fatty acid beta-oxidation using acyl-CoA oxidase
* fatty acid beta-oxidation
* carnitine metabolic process
* protein targeting to peroxisome

Sources:Amigo / QuickGO
| Orthologs

Species| Human| Mouse
Entrez| |

54677

74114

Ensembl| |

ENSG00000005469

ENSMUSG00000003623

UniProt| |

Q9UKG9

Q9DC50

RefSeq (mRNA)| |

NM_001143935
NM_001243745
NM_021151

NM_023733

RefSeq (protein)| |

NP_001137407
NP_001230674
NP_066974

NP_076222

Location (UCSC)| Chr 7: 87.35 – 87.4 Mb| Chr 5: 9.02 – 9.05 Mb
PubMed search| [3]| [4]
Wikidata
| View/Edit Human| View/Edit Mouse

|

Peroxisomal carnitine O-octanoyltransferase is an enzyme that in humans is encoded by the CROT gene.[5][6]

Carnitine octanoyltransferase (EC 2.3.1.137) is a carnitine acyltransferase that catalyzes the reversible transfer of fatty acyl groups between CoA and carnitine. This enzyme regulates the breakdown of Very Long Chain Fatty Acids (VLCFA) by performing a crucial step in the transport of medium length acyl chains out of the mammalian peroxisome to the cytosol and mitochondria for further breakdown. See also CRAT (MIM 600184). Van der Leij et al. (2000) reviewed the function, structural features, and phylogenetics of human carnitine acyltransferase genes, including CROT.[supplied by OMIM][6]

## References

[edit]

1. ^ a b c GRCh38: Ensembl release 89: ENSG00000005469 - Ensembl, May 2017
2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000003623 - Ensembl, May 2017
3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. ^ Ferdinandusse S, Mulders J, IJlst L, Denis S, Dacremont G, Waterham HR, Wanders RJ (Oct 1999). "Molecular cloning and expression of human carnitine octanoyltransferase: evidence for its role in the peroxisomal beta-oxidation of branched-chain fatty acids". Biochem Biophys Res Commun. 263 (1): 213–8\. doi:10.1006/bbrc.1999.1340. PMID 10486279.213-8&rft.date=1999-10&rft_id=info:doi/10.1006/bbrc.1999.1340&rft_id=info:pmid/10486279&rft.aulast=Ferdinandusse&rft.aufirst=S&rft.au=Mulders,+J&rft.au=IJlst,+L&rft.au=Denis,+S&rft.au=Dacremont,+G&rft.au=Waterham,+HR&rft.au=Wanders,+RJ&rfr_id=info:sid/en.wikipedia.org:CROT+(gene)" class="Z3988">
6. ^ a b "Entrez Gene: CROT carnitine O-octanoyltransferase".

## External links

[edit]

* Human CROT genome location and CROT gene details page in the UCSC Genome Browser.

## Further reading

[edit]

* van der Leij FR, Huijkman NC, Boomsma C, et al. (2000). "Genomics of the human carnitine acyltransferase genes". Mol. Genet. Metab. 71 (1–2): 139–53\. doi:10.1006/mgme.2000.3055. PMID 11001805.1–2&rft.pages=139-53&rft.date=2000&rft_id=info:doi/10.1006/mgme.2000.3055&rft_id=info:pmid/11001805&rft.aulast=van+der+Leij&rft.aufirst=FR&rft.au=Huijkman,+NC&rft.au=Boomsma,+C&rfr_id=info:sid/en.wikipedia.org:CROT+(gene)" class="Z3988">
* Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7\. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.2121-7&rft.date=2004&rft_id=https://www.ncbi.nlm.nih.gov/pmc/articles/PMC528928#id-name=PMC&rft_id=info:pmid/15489334&rft_id=info:doi/10.1101/gr.2596504&rft.aulast=Gerhard&rft.aufirst=DS&rft.au=Wagner,+L&rft.au=Feingold,+EA&rft_id=https://www.ncbi.nlm.nih.gov/pmc/articles/PMC528928&rfr_id=info:sid/en.wikipedia.org:CROT+(gene)" class="Z3988">
* Scherer SW, Cheung J, MacDonald JR, et al. (2003). "Human chromosome 7: DNA sequence and biology". Science. 300 (5620): 767–72\. Bibcode:2003Sci...300..767S. doi:10.1126/science.1083423. PMC 2882961. PMID 12690205.767-72&rft.date=2003&rft_id=https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2882961#id-name=PMC&rft_id=info:pmid/12690205&rft_id=info:doi/10.1126/science.1083423&rft_id=info:bibcode/2003Sci...300..767S&rft.aulast=Scherer&rft.aufirst=SW&rft.au=Cheung,+J&rft.au=MacDonald,+JR&rft_id=https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2882961&rfr_id=info:sid/en.wikipedia.org:CROT+(gene)" class="Z3988">
* Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903\. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.16899-903&rft.date=2003&rft_id=https://www.ncbi.nlm.nih.gov/pmc/articles/PMC139241#id-name=PMC&rft_id=info:pmid/12477932&rft_id=info:doi/10.1073/pnas.242603899&rft_id=info:bibcode/2002PNAS...9916899M&rft.aulast=Strausberg&rft.aufirst=RL&rft.au=Feingold,+EA&rft.au=Grouse,+LH&rft_id=https://www.ncbi.nlm.nih.gov/pmc/articles/PMC139241&rfr_id=info:sid/en.wikipedia.org:CROT+(gene)" class="Z3988">
* Morillas M, Gómez-Puertas P, Rubí B, et al. (2002). "Structural model of a malonyl-CoA-binding site of carnitine octanoyltransferase and carnitine palmitoyltransferase I: mutational analysis of a malonyl-CoA affinity domain". J. Biol. Chem. 277 (13): 11473–80\. doi:10.1074/jbc.M111628200. PMID 11790793.11473-80&rft.date=2002&rft_id=info:doi/10.1074/jbc.M111628200&rft_id=info:pmid/11790793&rft.aulast=Morillas&rft.aufirst=M&rft.au=Gómez-Puertas,+P&rft.au=Rubí,+B&rft_id=https://doi.org/10.1074%2Fjbc.M111628200&rfr_id=info:sid/en.wikipedia.org:CROT+(gene)" class="Z3988">
* Yu W, Andersson B, Worley KC, et al. (1997). "Large-scale concatenation cDNA sequencing". Genome Res. 7 (4): 353–8\. doi:10.1101/gr.7.4.353. PMC 139146. PMID 9110174.353-8&rft.date=1997&rft_id=https://www.ncbi.nlm.nih.gov/pmc/articles/PMC139146#id-name=PMC&rft_id=info:pmid/9110174&rft_id=info:doi/10.1101/gr.7.4.353&rft.aulast=Yu&rft.aufirst=W&rft.au=Andersson,+B&rft.au=Worley,+KC&rft_id=https://www.ncbi.nlm.nih.gov/pmc/articles/PMC139146&rfr_id=info:sid/en.wikipedia.org:CROT+(gene)" class="Z3988">
* Andersson B, Wentland MA, Ricafrente JY, et al. (1996). "A "double adaptor" method for improved shotgun library construction". Anal. Biochem. 236 (1): 107–13\. doi:10.1006/abio.1996.0138. PMID 8619474.107-13&rft.date=1996&rft_id=info:doi/10.1006/abio.1996.0138&rft_id=info:pmid/8619474&rft.aulast=Andersson&rft.aufirst=B&rft.au=Wentland,+MA&rft.au=Ricafrente,+JY&rfr_id=info:sid/en.wikipedia.org:CROT+(gene)" class="Z3988">

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