MolIDE

This article includes a list of references, related reading, or external links, but its sources remain unclear because it lacks inline citations. Please help improve this article by introducing more precise citations. (October 2011) (Learn how and when to remove this message)

|

Developed by the Dunbrack group at Fox Chase Cancer Center, MolIDE is an open-source cross-platform program for comparative modelling of protein structures. MolIDE acts as a graphical user interface to the common tasks involved in predicting protein structures based on known homologous structures. It implements the most frequently used steps involved in modeling: secondary structure prediction, multiple-round psiblast alignments, assisted alignment editing (integrating a template viewer and secondary structure prediction), side chain replacement and loop building.

## References

[edit]

* Wang, Qiang; Canutescu, Adrian A; Dunbrack, Roland L (2008). "SCWRL and MolIDE: Computer programs for side-chain conformation prediction and homology modeling". Nature Protocols. 3 (12): 1832–47\. doi:10.1038/nprot.2008.184. PMC 2682191. PMID 18989261.
* Canutescu, A. A.; Dunbrack, R. L. (2005). "MollDE: A homology modeling framework you can click with". Bioinformatics. 21 (12): 2914–6\. doi:10.1093/bioinformatics/bti438. PMID 15845657.

## External links

[edit]

* Dunbrack group