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List of unsolved problems in biology

Topic: Biology

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This article lists notable unsolved problems in biology.

General biology

Evolution and origins of life

  • Origin of life. Exactly how and when did life on Earth originate? Which, if any, of the many hypotheses is correct? What were the metabolic pathways used by the earliest life forms?
    • Origins of viruses. Exactly how and when did different groups of viruses originate?
    • Extraterrestrial life. Might life which does not originate from planet Earth also have developed on other planets? Might this life be intelligent?
  • Evolution of sex. What selective advantages drove the development of sexual reproduction, and how did it develop?[1]
  • Development and evolution of brain. How and why did the brain evolve? What are the molecular determinants of individual brain development?
  • Origin of Eukaryotes (Symbiogenesis). How and why did cells combine to form the eukaryotic cell? Did one or more random events lead to the first eukaryotic cells, or can the formation of eukaryotic cells be explained by physical and biological principles? How did the mitochondria's mitosis cycle come in sync with its host cell? Did the mitochondria or the nucleus develop first in eukaryotes?
  • Last Universal Common Ancestor. What were the characteristics of the Last Universal Common Ancestor of Archaea, Bacteria, and Eukaryotes? Did Archaea and Eukaryotes evolve out of the domain Bacteria or to a clade basal to it? Do Archaea and Eukaryotes share a later or earlier common ancestor to Bacteria?

Biochemistry and cell biology

See also: Unsolved:Hypothetical types of biochemistry
  • What do all the unknown proteins do? Almost two decades since the first eukaryotes were sequenced, the "biological role" of around 20% of proteins are still unknown.[2] Many of these proteins are conserved across most eukaryotic species and some are conserved in bacteria, indicating a role fundamental for life.[2][3][4]
  • Determinants of cell size. How do cells determine what size to grow to before dividing?
  • Golgi apparatus. In cell theory, what is the exact transport mechanism by which proteins travel through the Golgi apparatus?
  • Mechanism of action of drugs. The mechanisms of action of many drugs including lithium, thalidomide and ketamine[5] are not completely understood.
  • Protein folding. What is the folding code? What is the folding mechanism? Can we predict the native structure of a protein from its amino acid sequence? Is it possible to predict the secondary, tertiary and quaternary structure of a polypeptide sequence based solely on the sequence and environmental information? Inverse protein-folding problem: Is it possible to design a polypeptide sequence which will adopt a given structure under certain environmental conditions?[6][7] This was achieved for several small globular proteins in 2008.[8] In 2020, it was announced that Google's AlphaFold, a neural network based on DeepMind artificial intelligence, is capable of predicting a protein's final shape based solely on its amino-acid chain with an accuracy of around 90% on a test sample of proteins used by the team.[9]
  • Enzyme kinetics: Why do some enzymes exhibit faster-than-diffusion kinetics?[10]
  • RNA folding problem: Is it possible to accurately predict the secondary, tertiary and quaternary structure of a polyribonucleic acid sequence based on its sequence and environment?
  • Protein design: Is it possible to design highly active enzymes de novo for any desired reaction?[11]
  • Biosynthesis: Can desired molecules, natural products or otherwise, be produced in high yield through biosynthetic pathway manipulation?[12]
  • What is the mechanism of allosteric transitions of proteins? The concerted and sequential models have been hypothesised but neither has been verified.
  • What are the endogenous ligands of orphan receptors?
  • What substance is endothelium-derived hyperpolarizing factor?

Other

  • Why does biological aging occur? There are a number of hypotheses as to why senescence occurs including those that it is programmed by gene expression changes and that it is the accumulative damage of biological processes, but these lack explanatory power.
  • How do organs grow to the correct shape and size?[13] How are the final shape and size of organs so reliably formed? These processes are in part controlled by the Hippo signaling pathway.
  • Can developing biological systems tell the time?[13] To an extent, this appears to be the case, as shown by the CLOCK gene.
  • Star jelly. There isn't a total explanation about its origins.
  • Forest rings. The origin of forest rings is not known, despite several mechanisms for their creation having been proposed. Such hypotheses include radially growing fungus, buried kimberlite pipes, trapped gas pockets, and meteorite impact craters.

Human biology

  • Handedness: It is unclear how handedness develops, what purpose it serves, why right-handedness is far more common, and why left-handedness exists.
  • Laughter: While it is generally accepted that laughing evolved as a form of social communication, the exact neurobiological process that leads humans to laugh is not well understood.
  • Yawning: It is yet to be established what the biological or social purpose of yawning is.[14]
  • Heritable components of homosexuality: How to reconcile evolution with the heritable components of human homosexuality? Homosexuality is prevalent across human societies, past and present, and is currently responsible for reduced fecundity. These facts constitute an evolutionary puzzle.[15]
  • Decline in male sperm counts: It is unclear what is causing the steady decline of sperm counts worldwide since the twentieth century.[16]
  • Decline in average human body temperature since the 19th century: Medical data suggests that the average body temperature has declined 0.6 °C since the 19th century. The cause is unclear although it has been suggested that it has some relation with reduced inflammation from reduced exposure to microorganisms.[17]
  • Why are there blood types? It is unclear what the origin and purpose of having blood types is. It is thought that O blood may be an adaptation to malaria and that different blood types respond to different diseases but this hypothesis has yet to be proven. Why did these antigens develop in the first place? What accounts for the differences in blood type? How ancient are the differences in blood types? What accounts for the large number of rare non ABO blood types? What role do blood types have in fighting disease?[18]
  • Photic sneeze effect: What causes the photic sneeze effect? Why is it so common yet not universal?
  • Human sex pheromones: There is contradictory evidence on the existence of human pheromones. Do they actually exist, and if so, how do they affect behavior?[19]
  • Existence of the Grafenberg spot (G-spot): Does the G-spot actually exist? If so is it present in all women? What exactly is it?[20]

Neuroscience and cognition

Neurophysiology

Sleep What is the biological function of sleep? Why do we dream? What are the underlying brain mechanisms? What is its relation to anesthesia?
Neuroplasticity How plastic is the mature brain?
General anesthetic What is the mechanism by which it works?
Neuropsychiatric diseases What are the neural bases (causes) of mental diseases like psychotic disorders (e.g. mania, schizophrenia), Parkinson's disease, Alzheimer's disease, or addiction? Is it possible to recover loss of sensory or motor function?
Neural computation What are all the different types of neuron and what do they do in the brain?

Cognition and psychology

Cognition and decisions How and where does the brain evaluate reward value and effort (cost) to modulate behavior? How does previous experience alter perception and behavior? What are the genetic and environmental contributions to brain function?
Computational neuroscience How important is the precise timing of action potentials for information processing in the neocortex? Is there a canonical computation performed by cortical columns? How is information in the brain processed by the collective dynamics of large neuronal circuits? What level of simplification is suitable for a description of information processing in the brain? What is the neural code?
Computational theory of mind What are the limits of understanding thinking as a form of computing?
Consciousness What is the brain basis of subjective experience, cognition, wakefulness, alertness, arousal, and attention? Is there a "hard problem of consciousness"? If so, how is it solved? What, if any, is the function of consciousness?[21][22]
Free will Particularly the neuroscience of free will
Language How is it implemented neurally? What is the basis of semantic meaning?
Learning and memory Where do our memories get stored and how are they retrieved again? How can learning be improved? What is the difference between explicit and implicit memories? What molecule is responsible for synaptic tagging?
Noogenesis - the emergence and evolution of intelligence What are the laws and mechanisms - of new idea emergence (insight, creativity synthesis, intuition, decision-making, eureka); development (evolution) of an individual mind in the ontogenesis, etc.?
Perception How does the brain transfer sensory information into coherent, private percepts? What are the rules by which perception is organized? What are the features/objects that constitute our perceptual experience of internal and external events? How are the senses integrated? What is the relationship between subjective experience and the physical world?

Non-human biology

Ecology, evolution, and paleontology

Unsolved problems relating to the interactions between organisms and their distribution in the environment include:

  • Paradox of the plankton. The high diversity of phytoplankton seems to violate the competitive exclusion principle.
  • Cambrian explosion. What is the cause of the apparent rapid diversification of multicellular animal life around the beginning of the Cambrian, resulting in the emergence of almost all modern animal phyla?
  • Darwin's abominable mystery of botany/plants. What is the exact evolutionary history of flowers and what is the cause of the apparently sudden appearance of nearly modern flowers in the fossil record?
  • Adult form of Facetotecta. The adult form of this animal has never been encountered in the water, and it remains a mystery what it grows into.
  • Origin of snakes. Did snakes evolve from burrowing lizards or aquatic lizards? There is evidence for both hypotheses.
  • Origin of turtles. Did turtles evolve from anapsids or diapsids? There is evidence for both hypotheses.
  • Ediacaran biota. How should Ediacaran biota be classified? Even what kingdom they belong to is unclear. Why were they so decisively displaced by Cambrian biota?

Ethology

Unsolved problems relating to the behaviour of animals include:

  • Homing. A satisfactory explanation for the neurobiological mechanisms that allow homing in animals has yet to be found.
  • Flocking (behavior). How flocks of birds and bats coordinate their movements so quickly is not fully understood. Nor is the purpose of large flocks like those of starlings which seem to invite predators rather than protect them.[23]
  • Butterfly migration. How do the descendants of monarch butterfly all over Canada and the US eventually, after migrating for several generations, manage to return to a few relatively small overwintering spots?
  • Blue whale. There is not much data on the sexuality of the blue whale.[24]
  • Gall wasp. It is largely unknown how gall wasps induce gall formation in plants; chemical, mechanical, and viral triggers have been discussed.

Non-human organs and biomolecules

Unsolved problems relating to the structure and function of non-human organs, processes and biomolecules include:

  • Alkaloids. The function of these substances in living organisms which produce them is not known[25]
  • Korarchaeota (archaea). The metabolic processes of this phylum of archaea are so far unclear.
  • Glycogen body. The function of this structure in the spinal cord of birds is not known.
  • Arthropod head problem. A long-standing zoological dispute concerning the segmental composition of the heads of the various arthropod groups, and how they are evolutionarily related to each other.
  • Brightly colored bird eggs. It is unknown what evolutionary process would lead birds to having brightly colored eggs given the increased visibility to predators.[26]
  • Stegosaur osteoderms/scutes. There is a long-standing debate over whether the primary function of the osteoderms/scutes of stegosaurs is protection from predators, sexual display, species recognition, thermoregulation, or other functions.

See also

References

  1. ↑ Sherratt, Thomas N.; Wilkinson, David M. (2009). Big questions in ecology and evolution.. US: Oxford University Press. ISBN 978-0-19-954861-3. 
  2. ↑ 2.0 2.1 Wood, V; Lock, A; Harris, MA; Rutherford, K; Bähler, J; Oliver, SG (28 February 2019). "Hidden in plain sight: what remains to be discovered in the eukaryotic proteome?". Open Biology 9 (2): 180241. doi:10.1098/rsob.180241. PMID 30938578. 
  3. ↑ Edwards, Aled M.; Isserlin, Ruth; Bader, Gary D.; Frye, Stephen V.; Willson, Timothy M.; Yu, Frank H. (9 February 2011). "Too many roads not taken". Nature 470 (7333): 163–165. doi:10.1038/470163a. PMID 21307913. Bibcode: 2011Natur.470..163E. 
  4. ↑ Stoeger, Thomas; Gerlach, Martin; Morimoto, Richard I.; Nunes Amaral, Luís A.; Freeman, Tom (18 September 2018). "Large-scale investigation of the reasons why potentially important genes are ignored". PLOS Biology 16 (9): e2006643. doi:10.1371/journal.pbio.2006643. PMID 30226837. 
  5. ↑ "Classics in Chemical Neuroscience: Ketamine". ACS Chemical Neuroscience 8 (6): 1122–1134. June 2017. doi:10.1021/acschemneuro.7b00074. PMID 28418641. 
  6. ↑ "So much more to know". Science 309 (5731): 78–102. July 2005. doi:10.1126/science.309.5731.78b. PMID 15994524. 
  7. ↑ King, Jonathan (2007). "MIT OpenCourseWare - 7.88J / 5.48J / 7.24J / 10.543J Protein Folding Problem, Fall 2007 Lecture Notes - 1". MIT OpenCourseWare. http://ocw.mit.edu/courses/biology/7-88j-protein-folding-problem-fall-2007/index.htm. 
  8. ↑ "The protein folding problem". Annual Review of Biophysics 37: 289–316. June 2008. doi:10.1146/annurev.biophys.37.092707.153558. PMID 18573083. 
  9. ↑ Callaway, Ewen (2020-11-30). "'It will change everything': DeepMind's AI makes gigantic leap in solving protein structures" (in en). Nature 588 (7837): 203–204. doi:10.1038/d41586-020-03348-4. PMID 33257889. Bibcode: 2020Natur.588..203C. 
  10. ↑ "Comparison of the DNA association kinetics of the Lac repressor tetramer, its dimeric mutant LacIadi, and the native dimeric Gal repressor". The Journal of Biological Chemistry 272 (35): 22092–6. August 1997. doi:10.1074/jbc.272.35.22092. PMID 9268351. 
  11. ↑ "Archived copy". http://depts.washington.edu/bakerpg/drupal/node/465. 
  12. ↑ "Microbial engineering for the production of advanced biofuels". Nature 488 (7411): 320–8. August 2012. doi:10.1038/nature11478. PMID 22895337. Bibcode: 2012Natur.488..320P. 
  13. ↑ 13.0 13.1 "Open questions: how to get developmental biology into shape?". BMC Biology 17 (1): 17. February 2019. doi:10.1186/s12915-019-0636-6. PMID 30795745. 
  14. ↑ Gupta, Sharat; Mittal, Shallu (2013). "Yawning and its physiological significance". International Journal of Applied and Basic Medical Research 3 (1): 11–15. doi:10.4103/2229-516X.112230. PMID 23776833. 
  15. ↑ Jeffery, Austin (2021), Shackelford, Todd K.; Weekes-Shackelford, Viviana A., eds., "Homosexuality Paradox, The" (in en), Encyclopedia of Evolutionary Psychological Science (Cham: Springer International Publishing): pp. 3808–3817, doi:10.1007/978-3-319-19650-3_40, ISBN 978-3-319-19650-3, https://doi.org/10.1007/978-3-319-19650-3_40, retrieved 2022-04-17 
  16. ↑ Carlsen, E.; Giwercman, A.; Keiding, N.; Skakkebaek, N. E. (12 September 1992). "Evidence for decreasing quality of semen during past 50 years.". BMJ 305 (6854): 609–613. doi:10.1136/bmj.305.6854.609. PMID 1393072. 
  17. ↑ "Are Human Body Temperatures Cooling Down?". https://www.scientificamerican.com/article/are-human-body-temperatures-cooling-down/. 
  18. ↑ "Why do we have blood types? - BBC Future". https://www.bbc.com/future/article/20140715-why-do-we-have-blood-types. 
  19. ↑ "Do human pheromones actually exist? | Science | AAAS". https://www.sciencemag.org/news/2017/03/do-human-pheromones-actually-exist. 
  20. ↑ Kilchevsky, Amichai; Vardi, Yoram; Lowenstein, Lior; Gruenwald, Ilan (March 2012). "Is the Female G‐Spot Truly a Distinct Anatomic Entity?". The Journal of Sexual Medicine 9 (3): 719–726. doi:10.1111/j.1743-6109.2011.02623.x. PMID 22240236. 
  21. ↑ Sejnowski, Terrence J.; Hemmen, J. L. van (2006). 23 problems in systems neuroscience. Oxford [Oxfordshire]: Oxford University Press. ISBN 978-0-19-514822-0. http://papers.cnl.salk.edu/PDFs/23%20Problems%20in%20Systems%20Neuroscience%202005-2921.pdf. 
  22. ↑ "Consciousness: here, there and everywhere?". Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences (Philosophical Transactions of the Royal Society London B) 370 (1668): 20140167. May 2015. doi:10.1098/rstb.2014.0167. PMID 25823865. 
  23. ↑ "How a Flock of Birds Can Fly and Move Together | Audubon". 16 November 2011. https://www.audubon.org/magazine/march-april-2009/how-flock-birds-can-fly-and-move-together. 
  24. ↑ Articleworld.org Blue Whale
  25. ↑ Aniszewski, Tadeusz (2007). Alkaloids – secrets of life. Amsterdam: Elsevier. p. 142. ISBN 978-0-444-52736-3. 
  26. ↑ "The Mysteries of Eggs – Ornithology". 25 June 2019. https://ornithology.com/the-mysteries-of-eggs/. 



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