Table of Contents Categories
BOSS (molecular mechanics)
Topic: Software
From HandWiki - Reading time: 1 min
| Original author(s) | William L. Jorgensen |
|---|---|
| Developer(s) | Jorgensen Research Group, Yale University |
| Initial release | 1987 |
| Stable release | 4.9
/ January 2013 |
| Written in | Fortran |
| Operating system | Unix, Linux, Windows |
| Platform | x86, x86-64 |
| Available in | English |
| Type | Molecular modelling |
| License | Proprietary |
| Website | zarbi |
Biochemical and Organic Simulation System (BOSS) is a general-purpose molecular modeling program that performs molecular mechanics calculations, Metropolis Monte Carlo statistical mechanics simulations, and semiempirical Austin Model 1 (AM1), PM3, and PDDG/PM3 quantum mechanics calculations.[1] The molecular mechanics calculations cover energy minimizations, normal mode analysis and conformational searching with the Optimized Potentials for Liquid Simulations (OPLS) force fields. BOSS is developed by Prof. William L. Jorgensen at Yale University, and distributed commercially by Cemcomco, LLC and Schrödinger, Inc.
Key features
- OPLS force field inventor
- Geometry optimization
- Semiempirical quantum chemistry
- MC simulations for pure liquids, solutions, clusters or gas-phase systems
- Free energies are computed from statistical perturbation (free energy perturbation (FEP)) theory
- TIP3P, TIP4P, and TIP5P water models
See also
References
- ↑ Jorgensen, W.L.; Tirado-Rives, J. (2005). "Molecular modeling of organic and biomolecular systems using BOSS and MCPRO". J. Comput. Chem. 26 (16): 1689–1700. doi:10.1002/jcc.20297. PMID 16200637.
External links
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