Short description: Analytical technique that probes molecular layers adsorbed to the surface of a waveguide
Dual-polarization interferometry (DPI) is an analytical technique that probes molecular layers adsorbed to the surface of a waveguide using the evanescent wave of a laser beam. It is used to measure the conformational change in proteins, or other biomolecules, as they function (referred to as the conformation activity relationship).
Instrumentation
The technique is quantitative and real-time (10 Hz) with a dimensional resolution of 0.01 nm.[1]
Applications
A novel application for dual-polarization interferometry emerged in 2008, where the intensity of light passing through the waveguide is extinguished in the presence of crystal growth. This has allowed the very earliest stages in protein crystal nucleation to be monitored.[2] Later versions of dual-polarization interferometers also have the capability to quantify the order and disruption in birefringent thin films.[3] This has been used, for example, to study the formation of lipid bilayers and their interaction with membrane proteins.[4][5]
References
- ↑ Swann, MJ; Freeman, NJ; Cross, GH (2007). "Dual Polarization Interferometry: A Real-Time Optical Technique for Measuring (Bio)Molecular Orientation, Structure and Function at the Solid/Liquid Interface". in Marks, R.S.. Handbook of Biosensors and Biochips. 1. John Wiley & Sons. Pt. 4, Ch. 33, pp. 549–568. ISBN 978-0-470-01905-4.
- ↑ Boudjemline, A; Clarke, DT; Freeman, NJ; Nicholson, JM; Jones, GR (2008). "Early stages of protein crystallization as revealed by emerging optical waveguide technology". Journal of Applied Crystallography 41 (3): 523. doi:10.1107/S0021889808005098.
- ↑ Mashaghi, A; Swann, M; Popplewell, J; Textor, M; Reimhult, E (2008). "Optical Anisotropy of Supported Lipid Structures Probed by Waveguide Spectroscopy and Its Application to Study of Supported Lipid Bilayer Formation Kinetics". Analytical Chemistry 80 (10): 3666–76. doi:10.1021/ac800027s. PMID 18422336.
- ↑ Sanghera, N; Swann, MJ; Ronan, G; Pinheiro, TJ (2009). "Insight into early events in the aggregation of the prion protein on lipid membranes". Biochimica et Biophysica Acta (BBA) - Biomembranes 1788 (10): 2245–51. doi:10.1016/j.bbamem.2009.08.005. PMID 19703409.
- ↑ Lee, TH; Heng, C; Swann, MJ; Gehman, JD; Separovic, F; Aguilar, MI (2010). "Real-time quantitative analysis of lipid disordering by aurein 1.2 during membrane adsorption, destabilisation and lysis". Biochimica et Biophysica Acta (BBA) - Biomembranes 1798 (10): 1977–86. doi:10.1016/j.bbamem.2010.06.023. PMID 20599687.
Further reading
- Cross, GH; Ren, Y; Freeman, NJ (1999). "Young's fringes from vertically integrated slab waveguides: Applications to humidity sensing". Journal of Applied Physics 86 (11): 6483. doi:10.1063/1.371712. Bibcode: 1999JAP....86.6483C. http://dro.dur.ac.uk/16118/1/16118.pdf.
- Cross, G (2003). "A new quantitative optical biosensor for protein characterisation". Biosensors and Bioelectronics 19 (4): 383–90. doi:10.1016/S0956-5663(03)00203-3. PMID 14615097.
- Freeman, NJ; Peel, LL; Swann, MJ; Cross, GH; Reeves, A; Brand, S; Lu, JR (2004). "Real time, high resolution studies of protein adsorption and structure at the solid–liquid interface using dual polarization interferometry". Journal of Physics 16 (26): S2493–S2496. doi:10.1088/0953-8984/16/26/023. Bibcode: 2004JPCM...16S2493F.
- Khan, TR; Grandin, HM; Mashaghi, A; Textor, M; Reimhult, E; Reviakine, I (2008). "Lipid redistribution in phosphatidylserine-containing vesicles adsorbing on titania.". Biointerphases 3 (2): FA90. doi:10.1116/1.2912098. PMID 20408675.
Spectroscopy |
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| Vibrational |
- FT-IR
- Raman
- Resonance Raman
- Rotational
- Rotational–vibrational
- Vibrational
- Vibrational circular dichroism
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| UV–Vis–NIR |
- Ultraviolet–visible
- Fluorescence
- Vibronic
- Near-infrared
- Resonance-enhanced multiphoton ionization (REMPI)
- Raman optical activity spectroscopy
- Raman spectroscopy
- Laser-induced
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X-ray and photoelectron |
- Energy-dispersive X-ray spectroscopy
- Photoelectron
- Atomic
- Emission
- X-ray photoelectron spectroscopy
- EXAFS
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| Nucleon | |
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| Radiowave |
- NMR
- Terahertz
- ESR/EPR
- Ferromagnetic resonance
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| Others |
- Acoustic resonance spectroscopy
- Auger spectroscopy
- Astronomical spectroscopy
- Cavity ring-down spectroscopy
- Circular dichroism spectroscopy
- Coherent anti-Stokes Raman spectroscopy
- Cold vapour atomic fluorescence spectroscopy
- Conversion electron Mössbauer spectroscopy
- Correlation spectroscopy
- Deep-level transient spectroscopy
- Dual-polarization interferometry
- Electron phenomenological spectroscopy
- EPR spectroscopy
- Force spectroscopy
- Fourier-transform spectroscopy
- Glow-discharge optical emission spectroscopy
- Hadron spectroscopy
- Hyperspectral imaging
- Inelastic electron tunneling spectroscopy
- Inelastic neutron scattering
- Laser-induced breakdown spectroscopy
- Mössbauer spectroscopy
- Neutron spin echo
- Photoacoustic spectroscopy
- Photoemission spectroscopy
- Photothermal spectroscopy
- Pump–probe spectroscopy
- Saturated spectroscopy
- Scanning tunneling spectroscopy
- Spectrophotometry
- Time-resolved spectroscopy
- Time-stretch
- Thermal infrared spectroscopy
- Video spectroscopy
- Vibrational spectroscopy of linear molecules
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Protein structural analysis |
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| High resolution |
- Cryo-electron microscopy
- X-ray crystallography
- NMR
- Electron crystallography
- EPR
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| Medium resolution |
- Fiber diffraction
- Mass spectrometry
- SAXS
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| Spectroscopic |
- NMR
- Circular dichroism
- Dual-polarization interferometry
- Absorbance
- Fluorescence
- Fluorescence anisotropy
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| Translational Diffusion |
- Analytical ultracentrifugation
- Size exclusion chromatography
- Light scattering
- NMR
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| Rotational Diffusion |
- Fluorescence anisotropy
- Flow birefringence
- Dielectric relaxation
- NMR
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| Chemical |
- Hydrogen-deuterium exchange
- Site-directed mutagenesis
- Chemical modification
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| Thermodynamic | |
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| Computational |
- Protein structure prediction
- Molecular docking
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←Tertiary structure Quaternary structure→ |
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